3.3 Repetitive sequence annotation
The consensus and non-redundant repetitive sequences were obtained by a
combination of known, novel and tandem repeats, generating a total of
298.99 Mb of repetitive sequences, occupying 33.38% of the whole genome
assembly (Table 4 ). The repetitive sequences was comprised of
DNA transposons in 146.68 Mb (16.37% of the assembly), long
interspersed elements in 48.68 Mb (LINEs; 5.43%), short interspersed
nuclear elements in 3.41 Mb (SINEs; 0.38%), long terminal repeats in
38.27 Mb (LTRs; 4.27%), and unknown repeats in 87.71 Mb (9.79%)
(Table 4 ).