References
Amicizia, D., Zangrillo, F., Lai, P., Iovine, M., & Panatto, D. (2018).
Overview of Japanese encephalitis disease and its prevention. Focus on
IC51 vaccine (IXIARO®). Journal of preventive medicine and
hygiene, 59 (1), E99.
Blaker, H. (2000). Confidence curves and improved exact confidence
intervals for discrete distributions. Canadian Journal of
Statistics, 28 (4), 783-798.
Borah, J., Dutta, P., Khan, S., & Mahanta, J. (2013). Epidemiological
concordance of Japanese encephalitis virus infection among mosquito
vectors, amplifying hosts and humans in India. Epidemiology &
Infection, 141 (1), 74-80.
Campbell, G. L., Hills, S. L., Fischer, M., Jacobson, J. A., Hoke, C.
H., Hombach, J. M., . . . Tsu, V. D. (2011). Estimated global incidence
of Japanese encephalitis: a systematic review. Bulletin of the
World Health Organization, 89 (10), 766-774.
Cappelle, J., Duong, V., Pring, L., Kong, L., Yakovleff, M., Prasetyo,
D. B., . . . Ong, S. (2016). Intensive circulation of Japanese
encephalitis virus in peri-urban sentinel pigs near Phnom Penh,
Cambodia. PLOS Neglected Tropical Diseases, 10 (12), e0005149.
Dhanze, H., Bhilegaonkar, K., Rawat, S., Kumar, H. C., Kumar, A.,
Gulati, B., . . . Singh, R. (2019). Development of recombinant
nonstructural 1 protein based indirect enzyme linked immunosorbent assay
for sero-surveillance of Japanese encephalitis in swine. Journal
of Virological Methods, 272 , 113705.
Dhanze, H., Bhilegaonkar, K. N., Kumar, C., Kumar, M. S., Singh, P., &
Kumar, A. (2020). Development and evaluation of lateral flow assay for
sero-diagnosis of Japanese encephalitis in swine. Animal
Biotechnology, 31 (4), 350-356. doi:10.1080/10495398.2019.1602539
Dhanze, H., Bhilegaonkar, K. N., Rawat, S., Chethan, H. B., Kerketta,
P., Dudhe, N., & Kumar, A. (2014). Seasonal sero-prevalence of Japanese
encephalitis in swine using indirect IgG ELISA. J. Vet. Public
Health, 12 (2), 103-105.
Dhanze, H., Kumar, M. S., Singh, V., Gupta, M., Bhilegaonkar, K. N.,
Kumar, A., . . . Singh, R. K. (2020). Detection of recent infection of
Japanese encephalitis virus in swine population using IgM ELISA: a
suitable sentinel to predict infection in humans. Journal of
immunological methods, 486 , 112848.
Directorate of National Vector Borne Disease Control Programme. (2022).
State-wise number of AES/JE Cases and Deaths from 2015-2022(till Nov).
Retrieved from
https://protect-au.mimecast.com/s/KRVJC3QNPBiX8V848ug7f9Q?domain=ncvbdc.mohfw.gov.in
Duong, V., Sorn, S., Holl, D., Rani, M., Deubel, V., & Buchy, P.
(2011). Evidence of Japanese encephalitis virus infections in swine
populations in 8 provinces of Cambodia: implications for national
Japanese encephalitis vaccination policy. Acta Tropica, 120 (1-2),
146-150.
Gamer, M., Lemon, J., Gamer, M. M., Robinson, A., & Kendall’s, W.
(2012). Package ‘irr’. Various coefficients of interrater
reliability and agreement, 22 , 1-32.
Geevarghese, G., Shaikh, B., Jacob, P., & Bhat, H. (1994). Persistence
of haemagglutination-inhibition antibodies to JE and WN viruses in
naturally infected domestic pigs in Karnataka State, India. Acta
Virologica, 38 (4), 235-237.
Grolemund, G., & Wickham, H. (2011). Dates and times made easy with
lubridate. Journal of Statistical Software, 40 , 1-25.
Hyndman, R. J., & Khandakar, Y. (2008). Automatic time series
forecasting: the forecast package for R. Journal of Statistical
Software, 27 , 1-22.
Kanojia, P. C., Shetty, P. S., & Geevarghese, G. (2003). A long-term
study on vector abundance & seasonal prevalence in relation to the
occurrence of Japanese encephalitis in Gorakhpur district, Uttar
Pradesh. Indian Journal of Medical Research, 117 , 104-110.
Khan, S., Narain, K., Handigue, R., Dutta, P., Mahanta, J.,
Satyanarayana, K., & Srivastava, V. (1996). Role of some environmental
factors in modulating seasonal abundance of potential Japanese
encephalitis vectors in Assam, India. The Southeast Asian journal
of tropical medicine and public health, 27 (2), 382-391.
Kolhe, R., Bhilegaonkar, K., Dubbal, Z., Kaur, S., Das, S., & Agarwal,
R. (2015). Indirect ELISA for serosurveillance of Japanese encephalitis
in pigs. Indian Journal of Animal Research, 49 (3), 343-349.
Kumar, H. C., Dhanze, H., Bhilegaonkar, K., Chakurkar, E., Kumar, A., &
Yathish, H. (2020). Serological evidence of Japanese encephalitis virus
infection in pigs in a low human incidence state, Goa, India.Preventive veterinary medicine, 175 , 104882.
Kumari, R., & Joshi, P. L. (2012). A review of Japanese encephalitis in
Uttar Pradesh, India. WHO South-East Asia Journal of Public
Health, 1 (4), 374-395.
Ladreyt, H., Durand, B., Dussart, P., & Chevalier, V. (2019). How
central is the domestic pig in the epidemiological cycle of Japanese
encephalitis virus? A review of scientific evidence and implications for
disease control. Viruses, 11 (10), 949.
Moore, S. M. (2021). The current burden of Japanese encephalitis and the
estimated impacts of vaccination: Combining estimates of the spatial
distribution and transmission intensity of a zoonotic pathogen.PLOS Neglected Tropical Diseases, 15 (10).
doi:10.1371/journal.pntd.0009385
Mote, A. B., Mehta, D., Kumar, M. S., Gupta, M., Hussain, M., Patel, S.
M., . . . Dhanze, H. (2023). Genotypic characterization of Japanese
encephalitis virus circulating in swine population of India:
Genotype-III still in dominance. Virus Genes, 59 (1), 67-78.
Murhekar, M., Vivian Thangaraj, J. W., Mittal, M., & Gupta, N. (2018).
Acute encephalitis syndrome in Eastern Uttar Pradesh, India: changing
etiological understanding. Journal of medical entomology, 55 (3),
523-526.
Pantawane, P., Dhanze, H., Verma, M., Singh, G., Kapdi, A., Chauhan, J.,
& Bhilegaonkar, K. (2017). Seasonal occurrence of Japanese encephalitis
vectors in Bareilly district, Uttar Pradesh, India. Journal of
Vector Borne Diseases, 54 (3), 270-276.
Peiris, J., Amerasinghe, F., Arunagiri, C., Perera, L., Karunaratne, S.,
Ratnayake, C., . . . Abeysinghe, M. (1993). Japanese encephalitis in Sri
Lanka: comparison of vector and virus ecology in different agro-climatic
areas. Transactions of the Royal Society of Tropical Medicine and
Hygiene, 87 (5), 541-548.
R Core Team. (2022). R: A Language and Environment for Statistical
Computing . In. Retrieved from http://www.R-project.org/
Rogan, W. J., & Gladen, B. (1978). Estimating prevalence from the
results of a screening test. American Journal of Epidemiology,
107 (1), 71-76.
Ruget, A. S., Beck, C., Gabassi, A., Trevennec, K., Lecollinet, S.,
Chevalier, V., & Cappelle, J. (2018). Japanese encephalitis circulation
pattern in swine of northern Vietnam and consequences for swine’s
vaccination recommendations. Transboundary and Emerging Diseases,
65 (6), 1485-1492. doi:10.1111/tbed.12885
Signorell, A., Aho, K., Alfons, A., Anderegg, N., Aragon, T., Arppe, A.,
. . . Borchers, H. W. (2019). DescTools: Tools for descriptive
statistics. R package version 0.99, 28 , 17.
Singh, A. K., Kharya, P., Agarwal, V., Singh, S., Singh, N. P., Jain, P.
K., . . . Singh, R. K. (2020). Japanese encephalitis in Uttar Pradesh,
India: A situational analysis. Journal of family medicine and
primary care, 9 (7), 3716.
Singh, G., Agarwal, N., Singh, C., Pandey, S., Kumar, P., Singh, K., . .
. Gupta, M. (2013). Time and place distribution of Acute Encephalitis
Syndrome (AES) Japanese Encephalitis (JE) cases in Gorakhpur.Indian Journal of Community Health, 25 (1), 66-73.
Singh, H., Singh, N., & Mall, R. K. (2020). Japanese Encephalitis and
Associated Environmental Risk Factors in Eastern Uttar Pradesh: A time
series analysis from 2001 to 2016. Acta Tropica, 212 .
doi:10.1016/j.actatropica.2020.105701
Srivastava, N., Deval, H., Mittal, M., Kant, R., & Bondre, V. P.
(2021). The Outbreaks of Acute Encephalitis Syndrome in Uttar Pradesh,
India (1978-2020) and Its Effective Management: A Remarkable Public
Health Success Story. Front Public Health, 9 , 793268.
doi:10.3389/fpubh.2021.793268
Stevenson, M., Nunes, T., Heuer, C., Marshall, J., Sanchez, J.,
Thornton, R., . . . Kyle, R. (2017). epiR: Tools for the analysis of
epidemiological data (Version R package version 0.9-87). Retrieved from
https://CRAN.R-project.org/package=epiR
Suresh, K. P., Nayak, A., Dhanze, H., Bhavya, A. P., Shivamallu, C.,
Achar, R. R., . . . Patil, S. S. (2022). Prevalence of Japanese
encephalitis (JE) virus in mosquitoes and animals of the Asian
continent: A systematic review and meta-analysis. JOURNAL OF
INFECTION AND PUBLIC HEALTH, 15 (9), 942-949.
doi:https://doi.org/10.1016/j.jiph.2022.07.010
Trapletti, A., & Hornik, K. (2016). tseries: Time Series Analysis and
Computational Finance (Version R package version 0.10-35). Retrieved
from http://CRAN.R-project.org/package=tseries
Van den Hurk, A. F., Ritchie, S. A., & Mackenzie, J. S. (2009). Ecology
and geographical expansion of Japanese encephalitis virus. Annual
Review of Entomology, 54 , 17-35.
Walsh, M. G., Pattanaik, A., Vyas, N., Saxena, D., Webb, C.,
Sawleshwarkar, S., & Mukhopadhyay, C. (2022). High-risk landscapes of
Japanese encephalitis virus outbreaks in India converge on wetlands,
rain-fed agriculture, wild Ardeidae, and domestic pigs and chickens.International Journal of Epidemiology . doi:10.1093/ije/dyac050
Wang, H., & Liang, G. (2015). Epidemiology of Japanese encephalitis:
past, present, and future prospects. Therapeutics and Clinical
Risk Management, 11 , 435-448. doi:10.2147/TCRM.S51168
Wickham, H. (2009). ggplot2: Elegant graphics for data analysis :
New York, NY: Springer-Verlag
Wickham, H. (2011). The split-apply-combine strategy for data analysis.Journal of Statistical Software, 40 (1), 1-29.
Wickham, H. (2017). tidyverse: Easily install and load ‘tidyverse’
packages [computer program] (Version R package version 1.1.1).
Retrieved from https://CRAN.R-project.org/package=tidyverse
World Health Organization. (2019, 9 May 2019). Japanese encephalitis.
Retrieved from
https://www.who.int/news-room/fact-sheets/detail/japanese-encephalitis
Table 1 Model specifications for seasonal autoregressive time series
models of JEV seroprevalence in pigs sampled in eastern Uttar Pradesh,
India, February 2013 – December 2022. AIC = Akaike information
criterion. Final model = model 6.