Isolate name
|
Location of samples collection
|
Year
|
Source of inflow or outflow of pigs to markets
|
CVR
|
Number of repeats
|
Accession
Number
|
Reference
|
Nig_DWK286
|
Live pig market
Dawaki, Plateau State
|
2019
|
Both inflow and outflow
|
ABNAAAACBNAAAACBNAAAACBNAAAACBNAAAACBNAFA
|
41
|
|
This study
|
Nig_NUM424 |
Live pig market Numan Adamawa Sate |
2019 |
NA |
ABNAAAACBNAAAAAACAACBNAAAAACBNAFA |
33 |
|
This study |
Nig_KAF199 |
Live pig market Katsit Kafanchan Kaduna State |
2019 |
NA |
ABNAAAACBNAAACBNAAAACBNAFA |
26 |
|
This study |
Nig_KAF307 |
Live pig market Katsit Kafanchan Kaduna State |
2020 |
NA |
ABNAAAACBNAAAACBNAAAFA |
22 |
|
This study |
Nig_KAF194 |
Live pig market Katsit Kafanchan Kaduna State |
2019 |
NA |
ABNAAAACBNAAAACBNAFA |
20 |
|
This study |
Nig_KAF163 |
Live pig market Katsit Kafanchan Kaduna State |
2019 |
NA |
ABNABNAAAAAACBNAFA |
18 |
|
This study |
Nig_KAF253 |
Live pig market Katsit Kafanchan Kaduna State |
2020 |
NA |
ABNAAAACBNAFA |
13 |
|
This study |
Nig_PDM288T
|
Live pig market
Pandam, Plateau State
|
2020
|
NA
|
ABNAAAACBNAFA
|
13
|
|
This study
|
Nig_KAF41 |
Live pig market Katsit Kafanchan Kaduna State |
2019 |
NA |
BNDBNDBNAA |
10 |
|
This study |
Nig_KAF164 |
Live pig market Katsit Kafanchan Kaduna State |
2020 |
NA |
BNDBNDBNAA |
10 |
|
This study |
Katsit fetus 2 |
Live pig market Katsit Kafanchan Kaduna State |
2005 |
NA |
ABNAAAACBNAAAACBNAFA |
20a |
GQ427185 |
(Owolodun, , et al.,
2010) |
Nigeria_ABD13KPM2_A |
Live pig market Katsit Kafanchan Kaduna State |
2012 |
NA |
ABNAAAAACBNABTDBNAFA |
20b |
|
(Luka et al.,
2016) |
Nig11_KAF_14 |
Live pig market Katsit Kafanchan Kaduna State |
2014 |
NA |
ABNABNAAAAACBNA |
15 |
KT961377 |
(Luka et al.,
2016) |
Nig13_KAF_14 |
Live pig market Katsit Kafanchan Kaduna State |
2014 |
NA |
ABNABNAAAAACBNAFA |
17a |
KT961366 |
(Luka et al.,
2016) |
Nig12_KAF_14 |
Live pig market Katsit Kafanchan Kaduna State |
2014 |
NA |
ABNAAAACBNAAAACBNAAAACBNAAAACBNAAAACBNAAAACBNAFA |
48 |
KT961378 |
(Luka et al., 2016) |
PL03
|
K-Vom, Plateau State
Nigeria
|
2016
|
Inflow
|
ABNABNAAAAACBNA
|
Tet-15
|
|
Adedeji et al 2021
|
Nigeria_CDP11SP |
Delta/Ughelli |
2007 |
Outflow |
ABNABNAAAAACBNAFA |
17a |
KT150931 |
|
Nig29_LGTT5_15 |
Plateau/Langtang |
2015 |
Inflow |
ABNAAAACAAACBNAFA |
17b |
KT961375 |
|
Nig6_JS10_13 |
Plateau/Jos |
2013 |
Inflow |
ABNAAAACBNAAAACBNAAAACBNAAAACBNAAAACBNAAAACBNAFA |
48 |
KT961364 |
|
NIG_BNGBT2
|
Benue State
Nigeria
|
2009
|
Outflow
|
ABNAAAAACBNABTDBNAFA
|
20b
|
KT150924
|
Luka et al,, 2015
|
NIG_ABDPOSASF5
|
Jos Plateau State
Nigeria
|
2011
|
Inflow
|
ABNAAAAACBNABTDBNAFA
|
20b
|
KT150923
|
Luka et al,, 2015
|
Makurdi pig |
Benue, Nigeria |
2005 |
Outflow |
ABNAAAACBNAAAAACBNAFA |
21 |
GQ427186 |
(Owolodun, et al., 2010) |
Udi pig 1 |
Enugu State Nigeria |
2003 |
Outflow |
ABNAAAACBNAAAACBNAAAACBNAFA |
27 |
GQ427187 |
(Owolodun, Bastos, et al.,
2010) |
OJ pig 1 |
Edo |
2006 |
Outflow |
ABNAAAAACBNAAAACBNAAAAACBNAFA |
29 |
GQ427188 |
(Owolodun, Bastos, et al., 2010) |
Nig 01 |
Lagos |
2006 |
Outflow |
AAACBNAAAAAACBNAAAAAACBNAAAAB |
30 |
|
|
CAM/89 |
Cameroon |
1989 |
Inflow |
ABNAAAACBNAAAACBNAFA |
20a |
AF513045 |
|
IC‐SP/2014/3 |
Ivory Coast |
2014 |
NA |
ABNAAAAACBNABTDBNAFA |
20b |
MH836365 |
(Luka et al., 2016) |
Ben09/AGL1 |
Benin |
2009 |
NA |
ABNAAAAACBNAAAAACBNAFA |
22 |
|
(Alkhamis et al., 2018) |
Tog09/P1 |
Togo |
2009 |
NA |
ABNAAAAACBNAAAAACBNAFA |
Tet-22b |
|
(Alkhamis et al., 2018) |