Figure 3- GWA analysis reveals candidate genes underlying natural variation in DF circadian phenotypes
Manhattan plots show AMM derived SNP associations with period (top panel), phase (middle panel) and RAE (bottom panel). Data shown has >5% MAF and reflects the 10,000 highest –log10(p) values. Gene candidates selected for further analysis are labelled in red with arrows. The red dotted line indicates the 6.5 –log10(p) arbitrary threshold used for this study. Vertical grey lines are labelled under the x axis and represent positions of known circadian and flowering time genes with altered circadian phenotypes previously reported in mutants.