Acknowledgments
For support in long-read Oxford Nanopore sequencing, we thank Dr. Sara Goodwin from Cold Spring Harbor Laboratories. L.M.D. was supported, in part, by NSF-DEB 1838273, NSF-DGE 1633299, with S.J.R by NSF-DEB 1442142, and with A.M.B. by NSF-IOS 2032063 and 2031906. D.A.R. and D.D.M.S. were supported, in part, by NSF-DEB 1838283, and NSF-IOS 2032006. A.P.C was supported, in part, by NSF-IOS 2032011 and 2031926. T.M.L was supported by NSF-PRFB 2010853. L.R.Y. was supported by NSF-IOS 2032073 and NSF-DBI 1812035. E.C.T. was supported in part by an Irish Research Council Laureate Award IRCLA/2017/58. SCV was supported by a Max Planck Research Group awarded by the Max Planck Gesellschaft, a Human Frontiers Science Program Grant (RGP0058/2016) and a UKRI Future Leaders Fellowship (MR/T021985/1). The authors would like to thank Stony Brook Research Computing and Cyberinfrastructure, and the Institute for Advanced Computational Science at Stony Brook University for access to the high-performance SeaWulf computing system, which was made possible by a $1.4M National Science Foundation grant (#1531492). The High-Performance Computing Center at Texas Tech University and The Scientific Computing Department at the Instituto de Ecología, Universidad Nacional Autónoma de México provided computational infrastructure and technical support throughout the work.