Template-based docking
Some targets produced only low-reliability HHpred or DALI results, yet
we observed that the identified proteins had similar functional
annotations as the CASP targets. If the alignment of CASP server models
to these multimeric structures using TM-align24 seemed
plausible, we simply aligned CASP server models to different chains of
the templates and then relaxed the resulting models to remove structural
clashes using the same methods as in the case of free docking.