References
Allan, D., Erickson, D. L., & Fay, J. (1997). The influence of
catchment land use on stream integrity across multiple spatial scales.Freshwater Biology, 37, 149–161.
Baattrup-Pedersen, A., Larsen, S. E., Andersen, D.K., Jepsen, N.,
Nielsen, J. & Rasmussen, J. (2018). Headwater streams in the EU Water
Framework Directive: Evidence-based decision support to select streams
for river basin management plans. Science of the Total
Environment, 613–614, 1048–1054. doi:10.1016/j.scitotenv.2017.09.199
Brosse S., Lek S., & Townsend C. R. (2001) Abundance, diversity, and
structure of freshwater invertebrates and fish communities: an
artificial neural network approach. New Zealand Journal of Marine
and Freshwater Research , 35, 135–145.
doi:10.1080/00288330.2001.9516983
Buisson, L., Thuillier, W., Lek, S., Lim, P., & Grenouillet, G. (2008).
Climate change hastens the turnover of stream fish assemblages.Global Change Biology , 14, 2232–2248.
doi:10.1111/j.1365-2486.2008.01657.x
Buisson, L., & Grenouillet, G. (2009). Contrasted impacts of climate
change on stream fish assemblages along an environmental gradient.Diversity and Distributions , 15, 613–626.
doi:10.1111/j.1472-4642.2009.00565.x
Burdon, F. J., Reyes, M., Alder, A.C., Joss, A., Ort, C., Räsänen, K.,
& Stamm, C. (2016). Environmental context and magnitude of disturbance
influence trait-mediated community responses to wastewater in streams.Ecology and Evolution , 6, 3923–3939. doi:10.1002/ece3.2165
Bussi, G., Whitehead, P. G., Gutiérrez-Cánovas, C., Cayetano, P. G.,
Ledesma, J. L. J., Ormerod, S. J., & Couture, R.-M. (2018). Modelling
the effects of climate and land-use change on the hydrochemistry and
ecology of the River Wye (Wales). Science of the Total
Environment, 627, 733–743. doi:10.1016/j.scitotenv.2018.01.295
Chen, K., & Olden, J. D. (2020). Threshold responses of riverine fish
communities to land use conversion across regions of the world.Global Change Biology, 26, 4952–4965. doi:10.1111/gcb.15251
Chon, T. S. (2011). Self-organizing maps applied to ecological sciences.Ecological Informatics , 6 (2011), 50–61,
doi:10.1016/j.ecoinf.2010.11.002
Coutant, C. C. (1987). Thermal preference: when does an asset become a
liability. Environmental Biology of Fishes, 18, 161–172.
doi:10.1007/BF00000356
Davies, D. L., & Bouldin, D. W. (1979). A Cluster Separation Measure.IEEE Transactions on Pattern Analysis and Machine Intelligence,PAMI-1, 224–227. doi:10.1109/TPAMI.1979.4766909
Degerman, E., & Sers, B. (1994). The effect of lakes on the stream fish
fauna. Ecology of Freshwater Fish, 3, 116–122.
doi:10.1111/j.1600-0633.1994.tb00113.x
DeRolph, C. R., Nelson, S. A.,
Kwak, T. J., & Hain, E. F. (2015). Predicting fine-scale distributions
of peripheral aquatic species in headwater streams. Ecology and
Evolution 5, 152–163. doi:10.1002/ece3.1331
Domisch, S., Jähnig, S. C., Simaika, J. P., Kuemmerlen, M., & Stoll, S.
(2015). Application of species distribution models in stream ecosystems:
The challenges of spatial and temporal scale, environmental predictors
and species occurrence data. Fundamental and Applied Limnology ,
186, 45–61. doi:10.1127/fal/2015/0627
European Commission, (2000). Directive 2000/60/EC of the European
Parliament and of the council of 23rd October 2000 establishing a
framework for community action in the field of water policy.Official Journal of the European Communities , L327/1.
Fieseler, C., & Wolter, C. (2006). A fish-based typology of small
temperate rivers in the northeastern lowlands of Germany.Limnologica, 36, 2–16.
Franklin, J. (1995). Predictive vegetation mapping: geographic modeling
of biospatial patterns in relation to environmental gradients.Progress in Physical Geography, 19, 474–499.
doi:10.1177/030913339501900403
Fransen, B. R., Duke, S. D., McWethy, L. G., Walter, J. K., & Bibly, R.
E. (2006). A logistic regression model for predicting the upstream
extent of fish occurrence based on geographical information systems
data. North American Journal of Fisheries Management, 26,
960–975.
Giraudel, J. J., & Lek, S. (2001). A comparison of self–organizing map
algorithm and some conventional statistical methods for ecological
community ordination. Ecological Modelling, 146, 329–339. PII:
S0304-3800(01)00324-6
Gorman, O. T., & Karr, J. R. (1978). Habitat structure and stream fish
communities. Ecology, 59, 507–515.
Graham, C. T., & Harrod, C. (2009). Implications of climate change for
the fishes of the British Isles. Journal of Fish Biology, 74,
1143–1205. doi:10.1111/j.1095-8649.2009.02180.x
Greig, S. M., Sear D. A., & Carling, P. A. (2007) A review of factors
influencing the availability of dissolved oxygen to incubating salmonid
embryos. Hydrological Processes , 21, 323–334.
doi:10.1002/hyp.6188
Grossman, G. D., Ratajczak, R. E., Crawford, M., & Freeman, M. C.
(1998). Assemblage organization in stream fishes: Effects of
environmental variation and interspecific interactions. Ecological
Monographs, 68, 395–420.
Guisan A., & Zimmermann N. E. (2000). Predictive habitat distribution
models in ecology. Ecological Modelling, 135, 147–186. PII:
S0304-3800(00)00354-9
Hering, D., Feld, C. K., Moog, O., & Ofenböck, T. (2006). Cook book for
the development of a multimetric index for biological condition of
aquatic ecosystems: Experiences from the European AQEM and STAR projects
and related initiatives. Hydrobiologia , 566, 311–324.
doi:10.1007/978-1-4020-5493-8_22
Hijmans, J., Cameron, S. E., Parra, J. L., Jones, P. G., & Jarvis, A.
(2005). Very high resolution interpolated climate surfaces for global
land areas. International Journal of Climatology , 25, 1965–1978.
doi:10.1002/joc.1276
Holzer, S., (2008). European Fish Species: Taxa and guilds
classification regarding fish-based assessment methods. Diplomarbeit.
Universität Wien. 196 pp. doi:10.25365/thesis.2400
Hosmer, D. W. Jr., & Lemeshow, S. (1989). Applied logistic
regression . New York, Wiley.
Hughes, R. M., Howlin, S., & Kaufmann, P. R. (2004). A biointegrity
index (IBI) for coldwater streams of Western Oregon and Washington.Transactions of the American Fisheries Society, 133, 1497–1515.
Huston, M. A. (2005). The three phases of land-use change, Implications
for biodiversity. Ecological Applications , 15, 1864–1878.
doi:10.1890/03–5281
Kanno, Y., Letcher, B. H., Rosner A. L., & O´Neil, K. P. (2015).
Environmental factors affecting brook trout occurrence in headwater
stream segments. Transactions of the American Fisheries Society,144, 373–382. doi:10.1080/00028487.2014.991446
Kanno, Y., Vokoun, J. C., & Beauchene, M. (2010). Development of dual
fish multi-metric indices of biological condition for streams with
characteristic thermal gradients and low species richness.Ecological Indicators, 10, 565–571.
Karr, J. R., & Chu, E. W. (2000). Sustaining living rivers.Hydrobiologia, 422–423, 1–14.
Kaski, S. (1997). Data exploration using self-organizing maps.Acta Polytechnica Scandinavica, Mathematics, Computing and
Management in Engineering Series No. 82.
Keaton, M., Haney, D., & Andersen, C. B. (2005). Impact of drought upon
fish assemblage structure in two South Carolina Piedmont streams.Hydrobiologia 545, 209–223. doi:10.1007/s10750-005-2674-z
Koel, T. M., & Peterka, J. J. (2003). Stream fish communities and
environmental correlates in the Red River of the North, Minnesota and
North Dakota. Environmental Biology of Fishes 67, 137–155.
doi:10.1023/A:1025699512619
Kohonen, T. (1982). Self-organized formation of topologically correct
feature maps. Biological Cybernetics, 43, 59–69.
doi:10.1007/bf00337288
Kohonen T. (2001). Self-Organizing Maps . Springer Verlag.
Kohonen, T. (2014). MATLAB Implementations and Applications of the
Self-Organizing Map ., Helsinki, Unigrafia Oy. Available at:
http://docs.unigrafia.fi/publications/kohonen_teuvo/index.html.
Korsu, K., Huusko, A., & Muotka, T. (2007). Niche characteristics
explain the reciprocal invasion success of stream salmonids in different
continents. Proceedings of the National Academy of Sciences of the
United States of America, 104, 9725–9729.
Kristensen, P., Whalley, C., Néry, F., Zal, N., & Christiansen, T.
(2018) European waters. Assessment of status and pressures 2018.EEA Report, 7/2018. doi:10.2800/303664
Kristensen, P., & Globevnik, L. (2014). European small water bodies.Biology and Environment, Proceedings of the Royal Irish Academy,114B, 281–287. doi:10.3318/BIOE.2014.13
Lamouroux, N., Capra, H., Pouilly, M., & Souchon, Y. (1999). Fish
habitat preferences in large streams of southern France.Freshwater Biology, 42, 673–687.
Lange, K., Townsend, C. R., Gabrielsson, R., Chanut, P. C. M., &
Matthaei, C. D. (2014). Responses of stream fish populations to farming
intensity and water abstraction in an agricultural catchment.Freshwater Biology, 59, 286–299. doi:10.1111/fwb.12264
Lemm, J. U., Feld, C. K., & Birk, S. (2019). Diagnosing the causes of
river deterioration using stressor-specific metrics. Science of
the Total Environment, 651, 1105–1113.
doi:10.1016/j.scitotenv.2018.09.1570048-9697
Logez, M., Bady, P., & Pont, D.
(2012). Modelling the habitat requirement of riverine fish species at
the European scale: sensitivity to temperature and precipitation and
associated uncertainty. Ecology of Freshwater Fish, 21, 266–282.
doi:10.1111/j.1600-0633.2011.00545.x
Louhi, P., Ovaska, M., Mäki-Petäys, A., Erkinaro, J., & Muotka, T.
(2011). Does fine sediment constrain salmonid alevin development and
survival? Canadian Journal of Fisheries and Aquatic Sciences , 68,
1819–1826. doi:10.1139/F2011-106
Lü, G., Batty, M., Strobl, J., Lin, H., Zhu, A.-X., & Chen, M. (2019).
Reflections and speculations on the progress in Geographic Information
Systems (GIS): a geographic perspective. International Journal of
Geographical Information Science 33(2): 346–367.doi: 10.1080/13658816.2018.1533136
Maitland, P. S., & Campbell, R. N. (1992). Freshwater Fishes .
London, Harper Collins. 368 pp.
Marttila, H., & Kløve, B. (2010). Dynamics of erosion and suspended
sediment transport from drained peatland forestry. Journal of
Hydrology, 388, 414–425. doi:10.1016/j.jhydrol.2010.05.026
Matthews, W. J. (1998). Patterns in Freshwater Fish Ecology .
Chapman & Hall, New York.
Michel, C., Schindler-Wildhaber, Y., Epting, J., Thorpe, K. L.,
Huggenberger, P., Alewell, C., & Burkhardt-Holm, P. (2014). Artificial
steps mitigate the effect of fine sediment on the survival of brown
trout embryos in a heavily modified river. Freshwater Biology,59, 544–556. doi:10.1111/fwb.12284
Mierswa, I., Wurst, M., Klinkenberg, R., Scholz, M., & Euler, T.
(2006). Yale, Rapid prototyping for complex data mining tasks.Proceedings of the 12th ACM SIGKDD international conference on
knowledge discovery and data mining (KDD–06).doi:10.1145/1150402.1150531
Mitsuo, Y. (2017). Determining the relative importance of catchment and
site-scale factors in structuring fish assemblages in small coastal
streams. Knowledge & Management of Aquatic Ecosystems , 418,
1–6. doi:10.1051/kmae/2017046.
Nelson, R. L., Plaits, W. S., Larsen, D. P., & Jensen, S. E. (1992).
Trout distribution and habitat in relation to geology and geomorphology
in the North Fork Humboldt River drainage, northeastern Nevada.Transactions of the American Fisheries Society, 121, 405–426.
Nieminen, M., Piirainen, S., Sikström, U., Löfgren, S., Marttila, H., &
Sarkkola, S. (2018). Ditch network maintenance in peat-dominated boreal
forests: review and analysis of water quality management options.Ambio , 47, 535–545. doi:10.1007/s13280–018–1047–6
Nõges, P., Van de Bund, W., Cardoso, A. C., & Heiskanen, A.-S. (2007).
Impact of climatic variability on parameters used in typology and
ecological quality assessment of surface waters—implications on the
Water Framework Directive. Hydrobiologia, 584, 373–379. doi:
10.1007/s10750-007-0604-y
Oberdorff T., Pont D., Hugueny B., & Chessel D. (2001). A probabilistic
model characterizing fish assemblages of French rivers: a framework for
environmental assessment. Freshwater Biology , 46, 399–415.
Oberdorff T., Pont D., Hugueny B.,
& Porcher J. (2002). Development and validation of a fish-based index
for the assessment of ‘river health’ in France. Freshwater
Biology , 47, 1720–1734.
Park, Y.-S., Grenouillet, G., Esperance, B., & Lek, S. (2006). Stream
fish assemblages and basin land cover in a river network.Science of the Total
Environment, 365, 140–153. doi:10.1016/j.scitotenv.2006.02.046
Poikane, S., Salas Herrero, F., Kelly, M. G., Borja, A., Birke, S., &
van de Bund, W. (2020). European aquatic ecological assessment methods,
A critical review of their sensitivity to key pressures. Science
of the Total Environment, 740, 140075.
doi:10.1016/j.scitotenv.2020.140075
Pont, D., Hugueny, B., &
Oberdorff, T. (2005). Modelling habitat requirement of European fishes:
do species have similar responses to local and regional environmental
constraints? Canadian Journal of Fisheries and Aquatic Sciences,62, 163–173. doi:10.1139/F04-183.
Pont, D., Hugueny, B., Beier, U., Goffaux D., Melcher, A., Noble, R.,
Rogers, C., Roset, N., & Schmutz, S. (2006). Assessing river biotic
condition at a continental scale: a European approach using functional
metrics and fish assemblages. Journal of Applied Ecology, 43,
70–80. doi:10.1111/j.1365-2664.2005.01126.x
Porter, M. S., Rosenfeld, J., & Parkinson, E. A. (2000). Predictive
models of fish species distribution in the Blackwater Drainage, British
Columbia. North American Journal of Fisheries Management , 20,
349–359.
Pugh, M. W., Pandolfi, G., Franklin, T., & Gangloff, M. M. (2020).
Influences of in-stream habitat and upstream land–use on site occupancy
of the Kanawha darter (Etheostoma kanawhae ), A narrowly
distributed species from the New River (Upper Kanawha Basin).Aquatic Conservation: Marine and Freshwater Ecosystems 2020,
1–10. doi:10.1002/aqc.3473
Rieman, B. E., & McIntyre, J. D. (1995). Occurrence of bull trout in
naturally fragmented habitat patches of varied size. Transactions
of the American Fisheries Society, 124, 285–296.
Ripley, T., Scrimgeour, G., & Boyce, M. S. (2005). Bull trout
(Salvelinus confluentus ) occurrence and abundance influenced by
cumulative industrial developments in a Canadian boreal forest
watershed. Canadian Journal of Fisheries and Aquatic Sciences,62, 2431–2442. doi:10.1139/F05-150
Schinegger, R., Trautwein, C., Melcher, A., & Schmutz, S. (2012).
Multiple human pressures and their spatial patterns in European running
waters. Water and Environment Journal , 26, 261–273.
doi:10.1111/j.1747-6593.2011.00285.x
Schneider, C., Laize, C. L. R., Acreman M. C., & Flörke, M. (2013). How
will climate change modify river flow regimes in Europe? Hydrology
and Earth System Sciences 17, 325–339.
doi:10.5194/hess-17-325-2013
Sutela, T., Vehanen, T., Huusko, A., & Mäki-Petäys, A. (2017). Seasonal
shift in boreal riverine fish assemblages and associated bias in
bioassessment. Hydrobiologia, 787, 193–203.
doi:10.1007/s10750-016-2959-4
Terra, B. F., Hughes, R. M., & Araujo, F. G. (2016). Fish assemblages
in Atlantic forest streams: the relative influence of local and
catchment environments on taxonomic and functional species.Ecology of Freshwater Fish, 25, 527–544. doi:10.1111/eff.12231
Vehanen, T., Sutela, T., & Korhonen, H. (2010). Environmental
assessment of boreal rivers using fish data – a contribution to the
Water Framework Directive. Fisheries Management and Ecology, 17,
165–175. doi:10.1111/j.1365-2400.2009.00716.x
Vesanto, J., Himberg, J., Siponen, M., & Simula, O. (1998). Enhancing
SOM based data visualization. In Proceedings of the International
Conference on Soft Computing and Information/Intelligent Systems
(IIZUKA’98) , pages 64–67, Iizuka, Japan.
Vesanto, J., & Alhoniemi, E. (2000). Clustering of the self-organizing
map. IEEE Transactions on Neural Networks and Learning Systems ,
11, 586–600.
Vile, J. S., & Henning, B. F. (2018). Development of indices of biotic
integrity for high-gradient wadeable rivers and headwater streams in New
Jersey. Ecological Indicators , 90, 469–484.
Wang, L., Lyons, J., & Kanehl, P. (2001). Impacts of urbanization on
stream habitat and fish across multiple spatial scales.Environmental Management, 28, 255–66.
Wang, L., Lyons, J., Rasmussen, P., Seelbach, P., Simon, T., Wiley, M.,
Kanehl, P., Baker, E., Niemela, S., & Stewart, P. M. (2003). Watershed,
reach, and riparian influences on stream fish assemblages in the
Northern Lakes and Forest Ecoregion, USA. Canadian Journal of
Fisheries and Aquatic Sciences, 60, 491–505. doi:10.1139/F03-043
Watson, G. W., & Hillman, T. W. (1997). Factors affecting the
distribution and abundance of bull trout, an investigation at
hierarchical scales. North American Journal of Fisheries
Management, 17, 237–252.
Wilby, R. L., Orr, H. G., Hedger, M., Forrow, D., & Blackmore, M.
(2006). Risks posed by climate change to the delivery of Water Framework
Directive objectives in the UK. Environment International 32,
1043–1055. doi:10.1016/j.envint.2006.06.017
Xu, M., Wang, Z., Duan, X., & Pan, B. (2014). Effects of pollution on
macroinvertebrates and water quality bio-assessment.Hydrobiologia, 729, 247–259. doi:10.1007/s10750-013-1504-y