Data availability
The example SNP dataset distributed with SNPfiltR can be directly accessed by downloading the SNPfiltR package from CRAN and loading the dataset into the working environment, using the following code install.packages(“SNPfiltR”); data(vcfR.example) , in an R session. The UCE SNP dataset used for the SNPfiltR UCE SNP filtering vignette is publicly available for download at: (datadryad.org/stash/dataset/doi:10.5061/dryad.qh8sh). The RADseq SNP dataset used to generate the example SNP filtering pipeline shown in this paper will be released in a Dryad repository upon manuscript acceptance. The SNPfiltR package is stably documented on github at: github.com/DevonDeRaad/RADstackshelpR and at the dedicated site: devonderaad.github.io/SNPfiltR/