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\begin{document}

\title{Translating an open-ocean biogeochemistry code with cryptic sulfur
cycling to Chesapeake Bay requires considering the impacts of burial,
dissolved organic matter, and optics}



\author[1]{Rui Jin}%
\author[1]{Marie-Aude Pradal}%
\author[1]{Kalev Hantsoo}%
\author[1]{Anand Gnanadesikan}%
\author[2]{Pierre St-Laurent}%
\author[3]{Christian J Bjerrum}%
\affil[1]{Johns Hopkins University}%
\affil[2]{Virginia Institute of Marine Science,  William \& Mary}%
\affil[3]{University of Copenhagen}%


\vspace{-1em}



  
  \date{May 17, 2024}


\begingroup
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\selectlanguage{english}
\begin{abstract}
A number of models have been developed to simulate hypoxia in the
Chesapeake Bay, but these models do not agree on what processes must be
included. In this study we implemented a previously published
biogeochemical (BGC) code developed for open-ocean waters that includes
``cryptic'' microbial sulfur cycling, a process that can increase
denitrification and anammox rates in anoxic waters. We ran this BGC code
within the ChesROMS physical model of the Chesapeake Bay, then compared
the results to those of a ChesROMS simulation with an estuarine BGC code
previously implemented and calibrated in the Bay. The estuarine BGC code
neglects sulfur cycling but includes burial of particulate organic
matter (POM) and cycling of dissolved organic matter (DOM) and uses
different values for many parameters governing phytoplankton growth and
particle dynamics. At a key test site (the Bay Bridge Station), the
model with sulfur cycling gives better results for oxygen and nitrate.
However, it also gives a worse overprediction of ammonium-suggesting
that its greater accuracy in predicting these two variables may result
from cancellation of errors. By making comparisons among these two
models and derivatives of them, we show that the differences in modeled
oxygen and ammonium are largely due to whether or not the BGC codes
include cycling of DOM and sedimentary burial of POM, while the
differences in modeled nitrate are due to the other differences in the
modeled biogeochemical processes (sulfur cycling/anammox/optics).
Changes in parameters used in both BGC codes (in particular particle
sinking velocities) tended to compensate the other differences.
Predictions of hydrogen sulfide (H 2 S) within the Bay are very
sensitive to the details of the simulation, suggesting that it could be
a useful diagnostic.%
\end{abstract}%



\sloppy


\textbf{Supplementary Material}\selectlanguage{english}
\begin{longtable}[]{@{}llll@{}}
\toprule
\begin{minipage}[b]{0.22\columnwidth}\raggedright\strut
Table S1. Biochemical parameters used in models\strut
\end{minipage} & \begin{minipage}[b]{0.22\columnwidth}\raggedright\strut
\strut
\end{minipage} & \begin{minipage}[b]{0.22\columnwidth}\raggedright\strut
\strut
\end{minipage} & \begin{minipage}[b]{0.22\columnwidth}\raggedright\strut
\strut
\end{minipage}\tabularnewline
\midrule
\endhead
\begin{minipage}[t]{0.24\columnwidth}\raggedright\strut
Parameter\strut
\end{minipage} & \begin{minipage}[t]{0.24\columnwidth}\raggedright\strut
N\_BUR\_DOM\_CHES/ N\_BUR\_DOM\_PERU/SNP\_CHES\strut
\end{minipage} & \begin{minipage}[t]{0.24\columnwidth}\raggedright\strut
SNP\_PERU/SNP\_BUR\_DOM\_CHES/ SNP\_BUR\_DOM\_PERU\strut
\end{minipage} & \begin{minipage}[t]{0.24\columnwidth}\raggedright\strut
Unit\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 in oxic mineralization\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.3\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.3\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol O m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of NO3 in nitrate reduction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/15\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
15\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of NO2 in denitrification\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/30\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
30\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 inhibition in nitrate reduction and
denitrification\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1/1/1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1/1/1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol O m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 inhibition in sulfate
reduction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol O m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of NO3 inhibition in sulfate
reduction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/4\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
4\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
constant rate of sulfide oxidation by NO3\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.93\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.93\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
constant rate of sulfide oxidation by NO2\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.33\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.33\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
constant rate of sulfide oxidation by O2\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.93\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.93\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 in sulfide oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol O m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of NO3 in sulfide oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/2.9\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
2.9\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of NO2 in sulfide oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/6\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
6\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 inhibition in sulfide
oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol O m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
constant rate of anammox rate\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.07\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.07\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1 (mmol N m-3)-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
maximum rate of aerobic ammonium oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
maximum rate of aerobic nitrite oxidation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration of O2 in nitrification\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
radiation inhibition threshold of ammonium\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.0095\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.0095\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
radiation inhibition threshold of nitrite\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.0364\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.0364\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
light intensity at which inhibition is half-saturated for ammonium\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.036\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.036\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
light intensity at which inhibition is half-saturated for nitrite\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.074\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.074\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Small detritus remineralization rate N-fraction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.03/0.1/0.03\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1/0.03/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Small detritus remineralization rate C-fraction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.03/0.1/0.03\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1/0.03/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Large detritus remineralization rate N-fraction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.01/0.1/0.01\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1/0.01/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Large detritus remineralization rate C-fraction\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.01/0.01/0.01\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.01/0.01/0.01\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Q\_10\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
2.4/1/2.4\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1/2.4/1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
Null\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
phytoplankton growth rate at 0\selectlanguage{ngerman}°C\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.69\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.69\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
chlorophyll to phytoplanktonic maximum ratio\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.053\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.053\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mgChl mgC-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
initial slope of planktonic growth to light curve\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.125/0.025/0.125\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.025/0.125/0.025\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
(W m-2)-1 d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration for uptake of NO3 by phytoplankton\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.5\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.5\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration for uptake of NH4 by phytoplankton\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.5\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.5\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol N m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
stoichiometry of P to N in phytoplankton and zooplankton\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1/16\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
1/16\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
dimensionless\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half-saturation concentration for uptake of PO4 by phytoplankton (kNO3
/16)\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*/*/0.03125\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.03125\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
mmol P m-3\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
excretion rate due to basal metabolism\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
excretion rate due to phytoplankton assimilation\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
assimilation efficiency\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.75\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.75\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
dimensionless\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
maximum phytoplankton grazing rate\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.6\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.6\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
(mmol N m-3)-1 d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
phytoplankton mortality\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.15\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.15\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
zooplankton mortality\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.025\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.025\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
half saturation of phytoplankton ingestion\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
2\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
2\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
(mmol N m-3)-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
aggregation parameter\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.005\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.005\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
sinking velocity of phytoplankton\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
m d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
sinking velocity of small detritus\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1/2/0.1\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
2/0.1/2\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
m d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
sinking velocity of large detritus\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
5/20/5\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
20/5/20\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
m d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
maximum nitrification rate\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.05/0.05/*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
d-1\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
light intensity at which the inhibition of nitrification is
half-saturated\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.1/0.1/*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
threshold for light-inhibition of nitrification\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
0.0095/0.0095/*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
*\strut
\end{minipage} & \begin{minipage}[t]{0.22\columnwidth}\raggedright\strut
W m-2\strut
\end{minipage}\tabularnewline
\bottomrule
\end{longtable}\selectlanguage{english}
\begin{longtable}[]{@{}llll@{}}
\toprule
Table S2. Differences among the models & & &\tabularnewline
\midrule
\endhead
& N\_BUR\_DOM\_PERU/N\_BUR\_DOM\_CHES & SNP\_PERU/SNP\_CHES &
SNP\_BUR\_DOM\_PERU/SNP\_BUR\_DOM\_CHES\tabularnewline
Phytoplankton limitations & NO3, NH4 & NO3, NH4, PO4 & NO3, NH4,
PO4\tabularnewline
Growth rate/grazing/mortality/coagulation/sinking constants & Al Azhar
et al. (2014)/ Da et al. (2018) & Al Azhar et al. (2014)/ Da et al.
(2018) & Al Azhar et al. (2014)/ Da et al. (2018)\tabularnewline
Nitrogen species & NO3, NH4,DON,SdeN, LDeN & NO3, NH4,NO2,SdeN, LDeN &
NO3, NH4,NO2,DON,SdeN, LDeN\tabularnewline
Nitrogen fixation & No & Turned off & Turned off\tabularnewline
Burial depending on flux bottom velocity & Yes & No & Yes\tabularnewline
Annamox & No & Yes & Yes\tabularnewline
SRRA & No & Yes & Yes\tabularnewline
DSR & No & Yes & Yes\tabularnewline
Sedimentary denitrification & Yes & Yes & Yes\tabularnewline
\bottomrule
\end{longtable}\selectlanguage{english}
\begin{longtable}[]{@{}lllllll@{}}
\toprule
Table S3. R\textsuperscript{2} of CB2.2 & & & & & &\tabularnewline
\midrule
\endhead
& N\_BUR\_DOM\_CHES & SNP\_PERU & SNP\_CHES & N\_BUR\_DOM\_PERU &
SNP\_BUR\_DOM\_CHES & SNP\_BUR\_DOM\_PERU\tabularnewline
Oxygen & 0.28 & 0.73 & -0.17 & -0.23 & -2.47 & -1.41\tabularnewline
Nitrate & -0.03 & 0.11 & 0.02 & -22.66 & -3.82 & -7.57\tabularnewline
Ammonium & -1.49 & -6.99 & -5.72 & 0.01 & -0.27 & -0.36\tabularnewline
\bottomrule
\end{longtable}\selectlanguage{english}
\begin{longtable}[]{@{}lllllll@{}}
\toprule
Table S4. R\textsuperscript{2} of CB5.3 & Table S4. R\textsuperscript{2}
of CB5.3 & & & & &\tabularnewline
\midrule
\endhead
& N\_BUR\_DOM\_CHES & SNP\_PERU & SNP\_CHES & N\_BUR\_DOM\_PERU &
SNP\_BUR\_DOM\_CHES & SNP\_BUR\_DOM\_PERU\tabularnewline
Oxygen & 0.82 & 0.47 & 0.78 & 0.50 & 0.23 & -0.03\tabularnewline
Nitrate & -7.29 & -4.54 & -0.43 & 0.45 & -0.59 & -0.20\tabularnewline
Ammonium & -9.48 & -9.37 & -9.13 & 0.72 & 0.27 & -0.46\tabularnewline
\bottomrule
\end{longtable}\selectlanguage{english}
\begin{figure}[H]
\begin{center}
\includegraphics[width=0.70\columnwidth]{figures/image1/image1}

\end{center}
\end{figure}

S1.~~Oxygen (first row), Nitrate (second row), Ammonium (third~row)
profiles from SNP\_CHES, N\_BUR\_DOM\_PERU, SNP\_BUR\_DOM\_CHES and
SNP\_BUR\_DOM\_PERU~at the Bay Bridge station (CB3.3C) in year 2017.

\textbf{Hosted file}

\verb`essoar.10511319.1.docx`  available at \url{https://authorea.com/users/535090/articles/598648-translating-an-open-ocean-biogeochemistry-code-with-cryptic-sulfur-cycling-to-chesapeake-bay-requires-considering-the-impacts-of-burial-dissolved-organic-matter-and-optics}

\selectlanguage{english}
\FloatBarrier
\end{document}

