References
Acha S, Majure LC. 2022. A new approach using targeted sequence capture for phylogenomic studies across Cactaceae. Genes 13 : 350.
APG III. 2009. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III.Botanical Journal of the Linnean Society 161 : 105–121.
APG IV. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV.Botanical Journal of the Linnean Society , 181 : 1–20.
Bai C, Alverson WS, Follansbee A, Waller DM. 2012. New reports of nuclear DNA content for 407 vascular plant taxa from the United States. Annals of Botany 110 : 1623-1629.
Barker MS, Vogel H, Schranz ME. 2009. Paleopolyploidy in the Brassicales: analyses of the Cleome transcriptome elucidate the history of genome duplications in Arabidopsis and other Brassicales. Genome Biology and Evolution 1 : 391–399.
Birky Jr CW. 2001. The inheritance of genes in mitochondria and chloroplasts: laws, mechanisms, and models. Annual review of genetics 35 : 125–148.
Blanc G, Wolfe KH. 2004. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.The Plant Cell 16 : 1679–1691.
Bossert S, Danforth BN. 2018. On the universality of target‐enrichment baits for phylogenomic research. Methods in Ecology and Evolution 9 : 1453–1460.
Breinholt JW, Carey SB, Tiley GP, Davis EC, Endara L, McDaniel SF, Neves LG, Sessa EB, von Konrat M, Chantanaorrapint S et al. 2021. A target enrichment probe set for resolving the flagellate land plant tree of life. Applications in Plant Sciences 9 : e11406.
Buchfink B, Xie C, Huson DH. 2015. Fast and sensitive protein alignment using DIAMOND.Nature methods 12 : 59–60.
Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J. 2013. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. Nature biotechnology 31 : 1119–1125.
Campana MG. 2018. BaitsTools: Software for hybridization capture bait design. Molecular ecology resources 18 : 356–361.
Cao K, Peng Z, Zhao X, Li Y, Liu K, Arus P, Fang W, Chen C, Wang X, Wu J. 2022. Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance. BMC biology 20 : 1-17.
Carlsen MM, Fér T, Schmickl R, Leong-Škorničková J, Newman M, Kress WJ. 2018. Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: pushing the limits of genomic data. Molecular phylogenetics and evolution 128 : 55–68.
Chanderbali AS, Jin L, Xu Q, Zhang Y, Zhang J, Jian S, Carroll E, Sankoff D, Albert VA, Howarth DG. 2022. Buxus andTetracentron genomes help resolve eudicot genome history.Nature Communications 13 : 1-10.
Davis CC, Xi Z, Mathews S. 2014. Plastid phylogenomics and green plant phylogeny: almost full circle but not quite there. BMC biology 12 : 1–4.
Degnan JH, Rosenberg NA. 2006. Discordance of species trees with their most likely gene trees. PLoS genetics 2 : e68.
Dong W, Xu C, Wu P, Cheng T, Yu J, Zhou S, Hong D–Y. 2018.Resolving the systematic positions of enigmatic taxa: manipulating the chloroplast genome data of Saxifragales. Molecular phylogenetics and evolution 126 : 321–330.
Drinnan AN, Crane PR, Hoot SB. 1994. Patterns of floral evolution in the early diversification of non-magnoliid dicotyledons (eudicots). Plant Systematics and Evolution (Suppl.) 8 : 93–122.
Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires PK, Leebens-Mack J, Depamphilis CW. 2010. Identification of shared single copy nuclear genes in Arabidopsis , Populus , Vitisand Oryza and their phylogenetic utility across various taxonomic levels. BMC evolutionary biology 10 : 1–18.
Fishbein M, Hibsch-Jetter C, Soltis DE, Hufford L. 2001.Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation. Systematic Biology 50 : 817–847.
Folk RA, Mandel JR, Freudenstein JV. 2017. Ancestral gene flow and parallel organellar genome capture result in extreme phylogenomic discord in a lineage of angiosperms. Systematic Biology66 : 320–337.
Folk RA, Soltis PS, Soltis DE, Guralnick R. 2018. New prospects in the detection and comparative analysis of hybridization in the tree of life. American journal of botany 105 : 364–375.
Folk RA, Stubbs RL, Mort ME, Cellinese N, Allen JM, Soltis PS, Soltis DE, Guralnick RP. 2019. Rates of niche and phenotype evolution lag behind diversification in a temperate radiation. Proceedings of the National Academy of Sciences 116 : 10874–10882.
Fu Y, Li L, Hao S, Guan R, Fan G, Shi C, Wan H, Chen W, Zhang H, Liu G et al. 2017. Draft genome sequence of the Tibetan medicinal herb Rhodiola crenulata . Gigascience 6 : gix033.
García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, de Oliveira RS, Soltis DE, Soltis PS. 2017. Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular phylogenetics and evolution 111 : 231–247.
Gitzendanner MA, Soltis PS, Yi TS, Li DZ, Soltis DE. 2018.Plastome phylogenetics: 30 years of inferences into plant evolution.In Advances in botanical research 85 : 293–313.
Godsoe W, Larson MA, Glennon KL, Segraves KA. 2013.Polyploidization in Heuchera cylindrica (Saxifragaceae) did not result in a shift in climatic requirements. American journal of botany 100 : 496-508.
Jensen EL, Gaughran SJ, Garrick RC, Russello MA, Caccone A. 2021. Demographic history and patterns of molecular evolution from whole genome sequencing in the radiation of Galapagos giant tortoises.Molecular Ecology 30 : 6325–6339.
Jian S, Soltis PS, Gitzendanner MA, Moore MJ, Li R, Hendry TA, Qiu YL, Dhingra A, Bell CD, Soltis DE. 2008. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology 57 : 38–57.
Jiao F, Luo R, Dai X, Liu H, Yu G, Han S, Lu X, Su C, Chen Q, Song Q. 2020. Chromosome-level reference genome and population genomic analysis provide insights into the evolution and improvement of domesticated mulberry (Morus alba ). Molecular plant13 : 1001-1012.
Johnson MG, Gardner EM, Liu Y, Medina R, Goffinet B, Shaw AJ, Zerega NJ, Wickett NJ. 2016. HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment. Applications in Plant Sciences 4 : 1600016.
Johnson MG, Pokorny L, Dodsworth S, Botigue LR, Cowan RS, Devault A, Eiserhardt WL, Epitawalage N, Forest F, Kim JT et al. 2019. A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering.Systematic Biology 68 : 594–606.
Kalyaanamoorthy S, Minh BQ, Wong TK, Von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14 : 587–589.
Kim HR, Kim S, Jie EY, Kim SJ, Ahn WS, Jeong SI, Yu KY, Kim SW, Kim SY. 2021. Effects of Tiarella polyphylla D. Don callus extract on photoaging in human foreskin fibroblasts Hs68 cells.Natural Product Communications 16 : 1–9.
Korgaonkar A, Han C, Lemire AL, Siwanowicz I, Bennouna D, Kopec RE, Andolfatto P, Shigenobu S, Stern DL. 2021. A novel family of secreted insect proteins linked to plant gall development. Current Biology 31 : 1836–1849.
Kvist S, Siddall ME. 2013. Phylogenomics of A nnelida revisited: a cladistic approach using genome‐wide expressed sequence tag data mining and examining the effects of missing data. Cladistics29 : 435–448.
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods 9 : 357–359.
Lee MY, Ahn KS, Lim HS, Yuk JE, Kwon OK, Lee KY, Lee HK, Oh SR. 2012. Tiarellic acid attenuates airway hyperresponsiveness and inflammation in a murine model of allergic asthma. International Immunopharmacology 12 : 117–124.
Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y et al. 2019a. Origin of angiosperms and the puzzle of the Jurassic gap. Nature Plants 5 : 461–470.
Lv S, Cheng S, Wang Z, Li S, Jin X, Lan L, Yang B, Yu K, Ni X, Li N et al. 2020. Draft genome of the famous ornamental plantPaeonia suffruticosa . Ecology and Evolution 10 : 4518–4530.
Magallon S, Sanderson MJ. 2001. Absolute diversification rates in angiosperm clades. Evolution 55 : 1762–1780.
Malinsky M, Svardal H, Tyers AM, Miska EA, Genner MJ, Turner GF, Durbin R. 2018. Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow. Nature Ecology and Evolution 2 : 1940–1955.
Massonnet M, Cochetel N, Minio A, Vondras AM, Lin J, Muyle A, Garcia JF, Zhou Y, Delledonne M, Riaz S. 2020. The genetic basis of sex determination in grapes. Nature Communications 11 : 1-12.
Matthews ML, Endress PK. 2006. Floral structure and systematics in four orders of rosids, including a broad survey of floral mucilage cells. Plant Systematics and Evolution 260 : 199–221.
Maurin O, Anest A, Bellot S, Biffin E, Brewer G, Charles‐Dominique T, Cowan RS, Dodsworth S, Epitawalage N, Gallego Bet al. 2021. A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set. American Journal of Botany108 : 1087–1111.
McLay TG, Birch JL, Gunn BF, Ning W, Tate JA, Nauheimer L, Joyce EM, Simpson L, Schmidt‐Lebuhn AN, Baker WJ et al. 2021. New targets acquired: Improving locus recovery from the Angiosperms353 probe set. Applications in Plant Sciences 9 : e11420.
Miller M, Pfeiffer W, Schwartz T 2010 . Creating the CIPRES Science Gateway for inference of large phylogenetic trees. 2010 Gateway Computing Environments Workshop (GCE) 2010 : 1–8.
Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, Von Haeseler A, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular Biology and Evolution 37 : 1530–1534.
Minio A, Cochetel N, Massonnet M, Figueroa-Balderas R, Cantu D. 2022. HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101–14 Mgt. Scientific Data 9 : 1-8.
Mirarab S, Reaz R, Bayzid MS, Zimmermann T, Swenson MS, Warnow T. 2014. ASTRAL: genome-scale coalescent-based species tree estimation.Bioinformatics 30 : i541–i548.
Mirarab S, Warnow T. 2015. ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes.Bioinformatics 31 : i44–i52.
Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE. 2010.Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proceedings of the National Academy of Sciences 107 : 4623–4628.
Moore MJ, Hassan N, Gitzendanner MA, Bruenn RA, Croley M, Vandeventer A, Horn JW, Dhingra A, Brockington SF, Latvis M et al. 2011. Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region. International Journal of Plant Sciences 172 : 541–558.
Okuyama Y, Fujii N, Wakabayashi M, Kawakita A, Ito M, Watanabe M, Murakami N, Kato M. 2005. Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella(Saxifragaceae). Molecular Biology and Evolution 22 : 285-296.
One Thousand Plant Transcriptomes Initiative. 2019. One thousand plant transcriptomes and the phylogenomics of green plants.Nature 574 : 679–685.
Palmer JD, Zamir D. 1982. Chloroplast DNA evolution and phylogenetic relationships in Lycopersicon. Proceedings of the National Academy of Sciences 79 : 5006–5010.
Pamilo P, Nei M. 1988. Relationships between gene trees and species trees. Molecular Biology and Evolution 5 : 568–583.
Parra G, Bradnam K, Korf I. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.Bioinformatics 23 : 1061–1067.
Qiu YL, Li L, Wang B, Xue JY, Hendry TA, Li RQ, Brown JW, Liu Y, Hudson GT, Chen ZD. 2010. Angiosperm phylogeny inferred from sequences of four mitochondrial genes. Journal of Systematics and Evolution48 : 391–425.
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES et al. 2014. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159 : 1665–1680.
Rieseberg LH, Beckstrom-Sternberg SM, Liston A, Arias DM. 1991.Phylogenetic and systematic inferences from chloroplast DNA and isozyme variation in Helianthus sect. Helianthus (Asteraceae).Systematic Botany 16 : 50–76.
Rieseberg LH, Soltis D. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evolutionary Trends in Plants ,5 , 65–84.
Rieseberg LH, Whitton J, Linder CR. 1996. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Botanica Neerlandica 45 : 243–262.
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics19 : 1572–1574.
Rosvall M, Bergstrom CT. 2008. Maps of random walks on complex networks reveal community structure. Proceedings of the National Academy of Sciences 105 : 1118–1123.
Rouard M, Droc G, Martin G, Sardos J, Hueber Y, Guignon V, Cenci A, Geigle B, Hibbins MS, Yahiaoui N et al. 2018. Three new genome assemblies support a rapid radiation in Musa acuminata(wild banana). Genome Biology and Evolution 10 : 3129–3140.
Roure B, Baurain D, Philippe H. 2013. Impact of missing data on phylogenies inferred from empirical phylogenomic data sets.Molecular Biology and Evolution 30 : 197–214.
Shi C, Han K, Li L, Seim I, Lee SMY, Xu X, Yang H, Fan G, Liu X. 2020. Complete chloroplast genomes of 14 mangroves: phylogenetic and comparative genomic analyses. BioMed Research International . doi: 10.1155/2020/8731857.
Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM. 2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31 : 3210–3212.
Soltis D, Soltis P, Endress P, Chase MW, Manchester S, Judd W, Majure L, Mavrodiev E. 2018.Phylogeny and evolution of the angiosperms: revised and updated edition . University of Chicago Press.
Soltis DE, Kuzoff RK. 1995. Discordance between nuclear and chloroplast phylogenies in the Heuchera group (Saxifragaceae).Evolution 49 : 727–742.
Soltis DE, Smith SA, Cellinese N, Wurdack KJ, Tank DC, Brockington SF, Refulio‐Rodriguez NF, Walker JB, Moore MJ, Carlsward BS. 2011. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98 : 704–730.
Springer MS, DeBry RW, Douady C, Amrine HM, Madsen O, de Jong WW, Stanhope MJ. 2001. Mitochondrial versus nuclear gene sequences in deep-level mammalian phylogeny reconstruction. Molecular Biology and Evolution 18 : 132–143.
Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology57 : 758–771.
Stegemann S, Keuthe M, Greiner S, Bock R. 2012. Horizontal transfer of chloroplast genomes between plant species. Proceedings of the National Academy of Sciences 109 : 2434-2438.
Strand A, Leebens‐Mack J, Milligan B. 1997. Nuclear DNA‐based markers for plant evolutionary biology. Molecular Ecology6 : 113–118.
Stull GW, Pham KK, Soltis PS, Soltis DE. 2022. Deep reticulation: the long legacy of hybridization in vascular plant evolution. EcoevoRxiv . doi: 10.32942/X24W2K
Sun M, Soltis DE, Soltis PS, Zhu X, Burleigh JG, Chen Z. 2015.Deep phylogenetic incongruence in the angiosperm clade Rosidae.Molecular Phylogenetics and Evolution 83 : 156–166.
Sun M, Naeem R, Su JX, Cao ZY, Burleigh JG, Soltis PS, Soltis DE, Chen ZD. 2016. Phylogeny of the Rosidae: A dense taxon sampling analysis. Journal of Systematics and Evolution 54 : 363–391.
Sun M, Folk RA, Gitzendanner MA, Soltis PS, Chen Z, Soltis DE, Guralnick RP. 2020. Recent accelerated diversification in rosids occurred outside the tropics. Nature Communications 11 : 1–12.
Sun WH, Li Z, Xiang S, Ni L, Zhang D, Chen DQ, Qiu MY, Zhang QG, Xiao L, Din L et al. 2021. The Euscaphis japonica genome and the evolution of malvids. The Plant Journal 108 : 1382–1399.
Thomas SK, Liu X, Du ZY, Dong Y, Cummings A, Pokorny L, Xiang QY, Leebens‐Mack JH. 2021. Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set.American Journal of Botany 108 : 1112–1121.
Vatanparast M, Powell A, Doyle JJ, Egan AN. 2018. Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics. Applications in Plant Sciences 6 : e1036.
Wai CM, Weise SE, Ozersky P, Mockler TC, Michael TP, VanBuren R. 2019. Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album . PLoS Genetics 15 : e1008209.
Wang H, Moore MJ, Soltis PS, Bell CD, Brockington SF, Alexandre R, Davis CC, Latvis M, Manchester SR, Soltis DE. 2009. Rosid radiation and the rapid rise of angiosperm-dominated forests. Proceedings of the National Academy of Sciences 106 : 3853–3858.
Wang M, Li J, Wang P, Liu F, Liu Z, Zhao G, Xu Z, Pei L, Grover CE, Wendel JF. 2021b. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular biology and evolution38 : 3621-3636.
Wang S, Liang H, Wang H, Li L, Xu Y, Liu Y, Liu M, Wei J, Ma T, Le C. 2022a. The chromosome‐scale genomes of Dipterocarpus turbinatus and Hopea hainanensis (Dipterocarpaceae) provide insights into fragrant oleoresin biosynthesis and hardwood formation.Plant biotechnology journal 20 : 538-553.
Wang Y, Tang H, DeBarry JD, Tan X, Li J, Wang X, Lee T-h, Jin H, Marler B, Guo H et al. 2012. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.Nucleic Acids Research 40 : e49.
Wang Z, Li Y, Sun P, Zhu M, Wang D, Lu Z, Hu H, Xu R, Zhang J, Ma J et al. 2022b. A high-quality Buxus austro -yunnanensis (Buxales) genome provides new insights into karyotype evolution in early eudicots. BMC Biology 20 : 1–17.
Wendel JF, Doyle JJ. 1998. Phylogenetic incongruence: Window into genome history and molecular evolution. Molecular Systematics of Plants II . doi: 10.1007/978-1-4615-5419-6_10.
Wu Z, Raven P. 2003 . Flora of China Illustrations. 8. Brassicaceae through Saxifragaceae. Beijing: Science Press/St Louis: Missouri Botanical Garden Press.
Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J et al. 2017. The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism. Nature Communications 8 : 1–15.
Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24 : 1586–1591.
Yuan J, Jiang S, Jian J, Liu M, Yue Z, Xu J, Li J, Xu C, Lin L, Jing Y et al. 2022. Genomic basis of the giga-chromosomes and giga-genome of tree peony Paeonia ostii . Nature Communications 13 : 1–16.
Zeng L, Zhang Q, Sun R, Kong H, Zhang N, Ma H. 2014. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. Nature Communications 5 : 1–12.
Zeng L, Zhang N, Zhang Q, Endress PK, Huang J, Ma H. 2017.Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets. New Phytologist 214 : 1338–1354.
Zhang C, Rabiee M, Sayyari E, Mirarab S. 2018. ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees. BMC Bioinformatics 19 : 15–30.
Zhang C, Zhang T, Luebert F, Xiang Y, Huang CH, Hu Y, Rees M, Frohlich MW, Qi J, Weigend M et al. 2020. Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome duplications. Molecular Biology and Evolution 37 : 3188–3210.
Zhang N, Zeng L, Shan H, Ma H. 2012. Highly conserved low‐copy nuclear genes as effective markers for phylogenetic analyses in angiosperms. New Phytologist 195 : 923–937.
Zhang N, Wen J, Zimmer EA. 2016. Another look at the phylogenetic position of the grape order Vitales: Chloroplast phylogenomics with an expanded sampling of key lineages. Molecular Phylogenetics and Evolution 101 : 216–223.
Zhao L, Li X, Zhang N, Zhang SD, Yi TS, Ma H, Guo ZH, Li DZ. 2016. Phylogenomic analyses of large-scale nuclear genes provide new insights into the evolutionary relationships within the rosids.Molecular Phylogenetics and Evolution 105 : 166–176.
Zhao T, Holmer R, de Bruijn S, Angenent GC, van den Burg HA, Schranz ME. 2017. Phylogenomic synteny network analysis of MADS-box transcription factor genes reveals lineage-specific transpositions, ancient tandem duplications, and deep positional conservation. The Plant Cell 29 : 1278–1292.
Zhao T, Zwaenepoel A, Xue JY, Kao SM, Li Z, Schranz ME, Van de Peer Y. 2021. Whole-genome microsynteny-based phylogeny of angiosperms.Nature Communications 12 : 1–14.
Zhu S, Chen J, Zhao J, Comes HP, Li P, Fu C, Xie X, Lu R, Xu W, Feng Y. 2020. Genomic insights on the contribution of balancing selection and local adaptation to the long‐term survival of a widespread living fossil tree, Cercidiphyllum japonicum . New Phytologist 228 : 1674–1689.
Zhu XY, Chase MW, Qiu YL, Kong HZ, Dilcher DL, Li JH, Chen ZD. 2007. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC Evolutionary Biology7 : 1–15.
Zuntini AR, Frankel LP, Pokorny L, Forest F, Baker WJ. 2021. A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae. American Journal of Botany , 108 : 1066–1086.