3.3 Repeat element annotation, gene prediction, and gene
annotation
Four methods were applied to annotate the repeat elements of C.
japonica genome and 824.02 Mb repeat elements were identified, which
account for 57.65% of the assembly genome. The top 3 repeat elements
included DNA transposable element (DNA, 318.62 Mb; 22.29% of the
genome), long interspersed nuclear elements (236.31 Mb, 16.53%
of
the genome), and long terminal repeats (179.30 Mb, 12.54% of the
genome, Table.3).