Literature cited
Auld SKJR, Searle CL, Duffy MA (2017) Parasite transmission in a natural multihost–multiparasite community. Philosophical Transactions of the Royal Society B: Biological Sciences 372(1719):
Bento G, Routtu J, Fields PD, Bourgeois Y, Du Pasquier L, Ebert D (2017) The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model. PLOS Genetics 13(2):e1006596.
Bonacich P (2007) Some unique properties of eigenvector centrality. Social Networks 29(4):555-564.
Cable J et al. (2017) Global change, parasite transmission and disease control: lessons from ecology. Philosophical Transactions of the Royal Society B: Biological Sciences 372(1719):20160088.
Civitello DJ et al. (2015) Biodiversity inhibits parasites: Broad evidence for the dilution effect. Proceedings of the National Academy of Sciences 112(28):8667-8671.
Csardi G, Nepusz T (2006) The igraph software package for complex network research. InterJournal Complex Systems1695.
Dallas T, Huang S, Nunn C, Park AW, Drake JM (2017) Estimating parasite host range. Proceedings of the Royal Society B: Biological Sciences 284(1861):20171250.
Dormann CF, Gruber B, Fründ J (2008) Introducing the bipartite package: Analysing ecological networks. R News 88-11.
Duffy MA, James TY, Longworth A (2015) Ecology, virulence, and phylogeny of Blastulidium paedophthorum , a widespread brood parasite ofDaphnia spp. Applied and Environmental Microbiology 81(16):5486-5496.
Duneau D, Luijckx P, Ben-Ami F, Laforsch C, Ebert D (2011) Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions. BMC Biology 9(1):11.
Dziuba MK et al. (2023) Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp. bioRxiv2023.2004.2021.537887.
Ebert D (2005) Ecology, epidemiology and evolution of parasitism inDaphnia . National Library of Medicine (US), National Center for Biotechnology Information, Bethesda, MD.
Ebert D (2022) Daphnia as a versatile model system in ecology and evolution. EvoDevo 13(1):16.
Ebert D, Duneau D, Hall MD, Luijckx P, Andras JP, Du Pasquier L, Ben-Ami F (2015) A population biology perspective on the stepwise infection process of the bacterial pathogen Pasteuria ramosa inDaphnia . Advances in Parasitology in press
Gómez JM, Nunn CL, Verdú M (2013) Centrality in primate–parasite networks reveals the potential for the transmission of emerging infectious diseases to humans. Proceedings of the National Academy of Sciences 110(19):7738-7741.
Gowler CD, Rogalski MA, Shaw CL, Hunsberger KK, Duffy MA (2021) Density, parasitism, and sexual reproduction are strongly correlated in lake Daphnia populations. Ecology and Evolution 11(15):10446-10456.
Green J (1974) Parasites and epibionts of Cladocera. Transactions of the Zoological Society of London 32417-515.
Johnson PTJ, de Roode JC, Fenton A (2015a) Why infectious disease research needs community ecology. Science 349(6252):
Johnson PTJ, Ostfeld RS, Keesing F (2015b) Frontiers in research on biodiversity and disease. Ecology Letters 181119-1133.
Keesing F et al. (2010) Impacts of biodiversity on the emergence and transmission of infectious diseases. Nature 468(7324):647-652.
Lloyd-Smith JO et al. (2009) Epidemic dynamics at the human-animal interface. Science 326(5958):1362-1367.
LoGiudice K, Ostfeld RS, Schmidt KA, Keesing F (2003) The ecology of infectious disease: Effects of host diversity and community composition on Lyme disease risk. Proceedings of the National Academy of Sciences of the United States of America 100(2):567-571.
Luijckx P, Duneau D, Andras JP, Ebert D (2014) Cross-species infection trials reveal cryptic parasite varieties and a putative polymorphism shared among host species. Evolution 68(2):577-586.
Martin LB, Burgan SC, Adelman JS, Gervasi SS (2016) Host Competence: An Organismal Trait to Integrate Immunology and Epidemiology. Integrative and Comparative Biology 56(6):1225-1237.
McLean KD, Duffy MA (2020) Ecological Context Influences Evolution in Host-Parasite Interactions: Insights from the Daphnia-Parasite Model System*. In: Banzhaf W et al. (eds) Evolution in Action: Past, Present and Future: A Festschrift in Honor of Erik D. Goodman. Springer International Publishing, Cham, pp 289-307. doi:10.1007/978-3-030-39831-6_21
Mollentze N, Streicker DG (2020) Viral zoonotic risk is homogenous among taxonomic orders of mammalian and avian reservoir hosts. Proceedings of the National Academy of Sciences 117(17):9423-9430.
Parker IM et al. (2015) Phylogenetic structure and host abundance drive disease pressure in communities. Nature 520(7548):542-544.
Pedersen AB, Altizer S, Poss M, Cunningham AA, Nunn CL (2005) Patterns of host specificity and transmission among parasites of wild primates. International Journal for Parasitology 35(6):647-657.
Pedersen AB, Fenton A (2007) Emphasizing the ecology in parasite community ecology. Trends in Ecology & Evolution 22(3):133-139.
Petney TN, Andrews RH (1998) Multiparasite communities in animals and humans: frequency, structure and pathogenic significance. International Journal for Parasitology 28(3):377-393.
Pilosof S et al. (2014) Host–parasite network structure is associated with community-level immunogenetic diversity. Nature Communications 5(1):5172.
Plowright RK et al. (2015) Ecological dynamics of emerging bat virus spillover. Proceedings of the Royal Society B: Biological Sciences 282(1798):20142124.
Plowright RK, Parrish CR, McCallum H, Hudson PJ, Ko AI, Graham AL, Lloyd-Smith JO (2017) Pathways to zoonotic spillover. Nat Rev Micro advance online publication
Rachowicz LJ, Briggs CJ (2007) Quantifying the disease transmission function: effects of density on Batrachochytrium dendrobatidis transmission in the mountain yellow-legged frog Rana muscosa. Journal of Animal Ecology 76(4):711-721.
Refardt D, Canning EU, Mathis A, Cheney SA, Lafranchi-Tristem NJ, Ebert D (2002) Small subunit ribosomal DNA phylogeny of microsporidia that infect Daphnia (Crustacea: Cladocera). Parasitology 124381-389.
Roberts KE, Hughes WOH (2015) Horizontal transmission of a parasite is influenced by infected host phenotype and density. Parasitology 142(2):395-405.
Rogalski MA, Stewart Merrill TE, Gowler CD, Cáceres CE, Duffy MA (2021) Context-Dependent Host-Symbiont Interactions: Shifts along the Parasitism-Mutualism Continuum. The American Naturalist 198(5):563-575.
Runghen R, Poulin R, Monlleó-Borrull C, Llopis-Belenguer C (2021) Network Analysis: Ten Years Shining Light on Host-Parasite Interactions. Trends in Parasitology 37(5):445-455.
Rynkiewicz EC, Pedersen AB, Fenton A (2015) An ecosystem approach to understanding and managing within-host parasite community dynamics. Trends in Parasitology 31(5):212-221.
Shaw CL (2019) Drivers of Epidemic Timing and Size in a Natural Aquatic System. University of Michigan
Shaw CL, Bilich R, Duffy MA (in review) A common multi-host parasite shows genetic structuring at the host species and population levels.
Shaw CL, Bilich R, O’Brien B, Cáceres CE, Hall SR, James TY, Duffy MA (2021) Genotypic variation in an ecologically important parasite is associated with host species, lake and spore size. Parasitology 148(11):1303-1312.
Stewart Merrill TE, Calhoun DM, Johnson PTJ (2022) Beyond single host, single parasite interactions: Quantifying competence for complete multi-host, multi-parasite communities. Functional Ecology 36(8):1845-1857.
Streicker DG, Turmelle AS, Vonhof MJ, Kuzmin IV, McCracken GF, Rupprecht CE (2010) Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats. Science 329(5992):676-679.
Sun S-J, Calhoun SK, Duffy MA (2023) Host and parasite functional morphology jointly explain parasite specificity. Functional Ecology 37(6):1620-1627.
Tessier AJ, Woodruff P (2002) Cryptic trophic cascade along a gradient of lake size. Ecology 83(5):1263-1270.
Wale N, Duffy MA (2021) The Use and Underuse of Model Systems in Infectious Disease Ecology and Evolutionary Biology. The American Naturalist 198(1):69-92.
Woolhouse MEJ, Gowtage-Sequeria S (2005) Host range and emerging and reemerging pathogens. Emerging Infectious Diseases 11(12):1842-1847.