Filtration step |
C. carcharias |
C. carcharias excl.
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elasm-11022 & elasm-247 |
C. Carcharias excl.
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elasm-11022 |
C. leucas |
C. maximus |
C. maximus excl.
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elasm-1437 |
G. galeus |
I. oxyrinchus |
L. nasus |
S. acanthias |
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Whole genome |
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Biallelic SNPs |
40,243 |
36,251 |
39,072 |
48,410 |
133,530 |
111,992 |
35,703 |
76,911 |
99,094 |
53,063 |
< 0.2 missing genotype |
13,881 |
15,623 |
15,668 |
27,630 |
63,221 |
52,955 |
22,753 |
56,938 |
67,591 |
32,331 |
Minimum depth 5x |
7,566 |
8,670 |
8,808 |
15,986 |
42,442 |
32,879 |
13,040 |
37,770 |
43,243 |
18,887 |
Target regions only |
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Biallelic SNPs |
3,927 |
2,939 |
3,336 |
30,240 |
20,793 |
11,172 |
22,219 |
9,651 |
12,489 |
33,759 |
< 0.2 missing genotype |
3,688 |
2,811 |
3,182 |
17,131 |
18,769 |
9,725 |
14,573 |
9,390 |
12,126 |
21,011 |
Minimum depth 5x |
2,875 |
2,617 |
2,923 |
9,655 |
17,433 |
8,874 |
8,504 |
9,024 |
11,711 |
12,246 |