Abstract
Threadfin porgy (Evynnis cardinalis ) is an important commercial
fishing target of bottom trawl fisheries in the northern South China
Sea. It is mainly threatened by overexploitation and listed as
endangered in the IUCN Red List. To investigate E. cardinalispopulation demographic history and genetic structure, fragments of the
mitochondrial cytochrome c oxidase subunit I gene were sequenced for 162
individuals collected from Beibu Gulf, South China Sea. In total, 44
different haplotypes were identified, and the dominant widespread
haplotype was found in all 11 sampling sites. Across the dataset,
nucleotide diversity was low but haplotype diversity was high. Low
pairwise comparisons of ΦST and high gene flow between
all sampling sites revealed a genetically homogeneous population
structure in Beibu Gulf, which indicated a single panmictic stock ofE. cardinalis in this area. The star-like haplotype network,
unimodal mismatch distribution, and significantly negative Tajima’s D
and Fu’s Fs values indicated recent population demographic expansion ofE. cardinalis . The mismatch distribution and Bayesian skyline
plot results indicated that E. cardinalis from Beibu Gulf
experienced colonization and demographic expansion during the late
Pleistocene due to sea level fluctuations.
KEYWORDS : Haplotype pattern, Genetic differentiation,
Demographic expansion, COI, South China Sea