REFERENCES
- Akhatayeva Z, Mao C, Jiang F, Pan C, Lin C, Hao K, Lan T, Chen H,
Zhang Q, Lan X. Indel variants within the PRL and GHR genes associated
with sheep litter size. Reprod Domest Anim. 2020 Nov;55(11):1470-1478.
- Anacker C, Cattaneo A, Musaelyan K, Zunszain PA, Horowitz M, Molteni
R, Luoni A, Calabrese F, Tansey K, Gennarelli M, Thuret S, Price J,
Uher R, Riva MA, Pariante CM. Role for the kinase SGK1 in stress,
depression, and glucocorticoid effects on hippocampal neurogenesis.
Proc Natl Acad Sci U S A. 2013 May 21;110(21):8708-13.
- Black BL, Olson EN. Transcriptional control of muscle development by
myocyte enhancer factor-2 (MEF2) proteins. Annu Rev Cell Dev Biol.
1998;14:167-96.
- Bourgeois, C.F.; Mortreux, F.; Auboeuf, D. The multiple functions of
RNA helicases as drivers and regulators of gene expression. Nat Rev
Mol Cell Biol 2016, 17, 426-438.
- Barclay, A.N. Different reticular elements in rat lymphoid tissue
identified by localization of Ia, Thy-1 and MRC OX 2 antigens.
Immunology 1981, 44, 727.
- Casey N, Van Niekerk HWA, The Boer goat. I. Origin, adaptability,
performance testing, reproduction and milk. Small Rumin
Res1988,1:291–302.
- Cui W, Liu N, Zhang X, Zhang Y, Qu L, Yan H, Lan X, Dong W, Pan C. A
20-bp insertion/deletion (indel) polymorphism within the CDC25A gene
and its associations with growth traits in goat. Arch Anim Breed. 2019
Jun 17;62(1):353-360.
- Caretti G, Schiltz RL, Dilworth FJ, Di Padova M, Zhao P, Ogryzko V,
Fuller-Pace FV, Hoffman EP, Tapscott SJ, Sartorelli V. The RNA
helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD
and skeletal muscle differentiation. Dev Cell. 2006 Oct;11(4):547-560.
- Chen M, Wang J, Liu N, Cui W, Dong W, Xing B, Pan C. Pig SOX9:
Expression profiles of Sertoli cell (SCs) and a functional 18 bp indel
affecting testis weight. Theriogenology. 2019 Oct 15;138:94-101.
- Etherington GJ, Ramirez-Gonzalez RH, MacLean D. bio-samtools 2: a
package for analysis and visualization of sequence and alignment data
with SAMtools in Ruby. Bioinformatics. 2015 Aug 1;31(15):2565-7.
- Fujitani M, Sato R, Yamashita T. Loss of p73 in ependymal cells during
the perinatal period leads to aqueductal stenosis. Sci Rep. 2017 Sep
20;7(1):12007.
- Hudson RR, Slatkin M, Maddison WP. Estimation of levels of gene flow
from DNA sequence data. Genetics. 1992 Oct;132(2):583-9.
- Hoek RM, Ruuls SR, Murphy CA, Wright GJ, Goddard R, Zurawski SM, Blom
B, Homola ME, Streit WJ, Brown MH, Barclay AN, Sedgwick JD.
Down-regulation of the macrophage lineage through interaction with OX2
(CD200). Science. 2000 Dec 1;290(5497):1768-1771.
- Han Y, Zhuang Q, Sun B, Lv W, Wang S, Xiao Q, Pang B, Zhou Y, Wang F,
Chi P, Wang Q, Li Z, Zhu L, Li F, Deng D, Chiang YC, Li Z, Ren R.
Crystal structure of steroid reductase SRD5A reveals conserved steroid
reduction mechanism. Nat Commun. 2021 Jan 19;12(1):449.
- Ju X, Huang X, Zhang M, Lan X, Wang D, Wei C, Jiang H. Effects of
eight InDel variants in FHIT on milk traits in Xinjiang brown cattle.
Anim Biotechnol. 2020 May 13:1-9.
- Jung K, Saif LJ, Wang Q. Porcine epidemic diarrhea virus (PEDV): An
update on etiology, transmission, pathogenesis, and prevention and
control. Virus Res. 2020 Sep;286:198045.
- Jewell JL, Oh E, Thurmond DC. Exocytosis mechanisms underlying insulin
release and glucose uptake: conserved roles for Munc18c and syntaxin
4. Am J Physiol Regul Integr Comp Physiol. 2010 Mar;298(3):R517-31.
- Jiang Q, Lee CY, Mandrekar S, Wilkinson B, Cramer P, Zelcer N, Mann K,
Lamb B, Willson TM, Collins JL, Richardson JC, Smith JD, Comery TA,
Riddell D, Holtzman DM, Tontonoz P, Landreth GE. ApoE promotes the
proteolytic degradation of Abeta. Neuron. 2008 Jun 12;58(5):681-693.
- Karolak JA, Bacolla A, Liu Q, Lantz PE, Petty J, Trapane P, Panzer K,
Totapally BR, Niu Z, Xiao R, Xie NG, Wu LR, Szafranski P, Zhang DY,
Stankiewicz P.A recurrent 8 bp frameshifting indel in FOXF1 defines a
novel mutation hotspot associated with alveolar capillary dysplasia
with misalignment of pulmonary veins.Am J Med Genet A. 2019
Nov;179(11):2272-2276.
- Kang Z, Zhang S, He L, Zhu H, Wang Z, Yan H, Huang Y, Dang R, Lei C,
Chen H, Qu L, Lan X, Pan C. A 14-bp functional deletion within the
CMTM2 gene is significantly associated with litter size in goat.
Theriogenology. 2019 Nov;139:49-57.
- Kwon, J.-W.; Kim, N.-H.; Choi, I. Expression of porcine CXADR and its
role in blastocyst formation. In Proceedings of Society for
Reproduction and Fertility Annual Conference 2015.
- Li H, Xu H, Akhatayeva Z, Liu H, Lin C, Han X, Lu X, Lan X, Zhang Q,
Pan C. Novel indel variations of the sheep FecB gene and their effects
on litter size. Gene. 2021 Jan 30;767:145176.
- Li H, Wang X, Chen H, Qu L, Lan X. A 17-bp InDel (rs668420586) within
goat CHCHD7 gene located in growth-related QTL affecting body
measurement traits. 3 Biotech. 2020 Oct;10(10):441.
- Liu, Y; Ju, Z; Jiang, Q; Liu, W; Yang, C; Zhang, Y; Wang, X; Gao, Y;
Wei, X; Sun, Y. DNA methylation and alternative splicing modulate
FBXW11 gene expression in Holstein bull testis and are correlated with
sperm quality. Biocell 2021, 45(1) , 79–87.
- Legerlotz K, Smith HK. Role of MyoD in denervated, disused, and
exercised muscle. Muscle Nerve. 2008 Sep;38(3):1087-1100.
- Lavery GG, Walker EA, Turan N, Rogoff D, Ryder JW, Shelton JM,
Richardson JA, Falciani F, White PC, Stewart PM, Parker KL, McMillan
DR. Deletion of hexose-6-phosphate dehydrogenase activates the
unfolded protein response pathway and induces skeletal myopathy. J
Biol Chem. 2008 Mar 28;283(13):8453-8461.
- Matson CK, Murphy MW, Sarver AL, Griswold MD, Bardwell VJ, Zarkower D.
DMRT1 prevents female reprogramming in the postnatal mammalian testis.
Nature. 2011 Jul 20;476(7358):101-4.
- Matsumoto Y, Noguchi E, Imoto Y, Nanatsue K, Takeshita K, Shibasaki M,
Arinami T, Fujieda S. Upregulation of IL17RB during natural allergen
exposure in patients with seasonal allergic rhinitis. Allergol Int.
2011 Mar;60(1):87-92.
- Mukherjee S, Shaikh N, Khavale S, Shinde G, Meherji P, Shah N, Maitra
A. Genetic variation in exon 17 of INSR is associated with insulin
resistance and hyperandrogenemia among lean Indian women with
polycystic ovary syndrome. Eur J Endocrinol. 2009 May;160(5):855-862.
- Mathew SJ, Hansen JM, Merrell AJ, Murphy MM, Lawson JA, Hutcheson DA,
Hansen MS, Angus-Hill M, Kardon G. Connective tissue fibroblasts and
Tcf4 regulate myogenesis. Development. 2011 Jan;138(2):371-84.
- Masliah E, Mallory M, Ge N, Alford M, Veinbergs I, Roses AD.
Neurodegeneration in the central nervous system of apoE-deficient
mice. Exp Neurol.1995 Dec;136(2):107-122.
- Nemajerova A, Moll UM. Tissue-specific roles of p73 in development and
homeostasis. J Cell Sci. 2019 Oct 3;132(19):jcs233338.
- Nakashima Y, Raines EW, Plump AS, Breslow JL, Ross R. Upregulation of
VCAM-1 and ICAM-1 at atherosclerosis-prone sites on the endothelium in
the ApoE-deficient mouse. Arterioscler Thromb Vasc Biol. 1998
May;18(5):842-851.
- Okamoto H, Obici S, Accili D, Rossetti L. Restoration of liver insulin
signaling in Insr knockout mice fails to normalize hepatic insulin
action. J Clin Invest. 2005 May;115(5):1314-22.
- Oh E, Spurlin BA, Pessin JE, Thurmond DC. Munc18c heterozygous
knockout mice display increased susceptibility for severe glucose
intolerance. Diabetes. 2005 Mar;54(3):638-47.
- Pozarska A, Niess G, Seeger W, Morty, R. A role for the accessory type
III transforming growth factor β receptor (Tgfbr3) in lung
alveolarisation. Eur Respiratory Soc: 2016.
- Raymond CS, Murphy MW, O’Sullivan MG, Bardwell VJ, Zarkower D. Dmrt1,
a gene related to worm and fly sexual regulators, is required for
mammalian testis differentiation. Genes Dev. 2000 Oct
15;14(20):2587-95.
- Russell, D.W.; Wilson, J.D. Steroid 5 alpha-reductase: two genes/two
enzymes. Annu Rev Biochem 1994, 63, 25-61.
- Ruskin R, Kiet T, Amanam I, Chen L, Brooks R, Ueda S, Kapp D, Chan J.
Differences in tumor immune regulation between African–American and
Caucasian ovarian cancer patients. Gynecologic Oncology 2012, 127,
S14.
- Reaven, G. Insulin resistance, the insulin resistance syndrome, and
cardiovascular disease. Panminerva medica 2005, 47, 201-210.
- Ramnarine TJS, Glaser-Schmitt A, Catalán A, Parsch J.Population
Genetic and Functional Analysis of a cis-Regulatory Polymorphism in
the Drosophila melanogaster Metallothionein A gene. Genes (Basel).
2019 Feb 14;10(2):147.
- StieweT, Pützer,B.M. p73 in apoptosis. Apoptosis 2001, 6,447-452.
- Santos Guasch GL, Beeler JS, Marshall CB, Shaver TM, Sheng Q, Johnson
KN, Boyd KL, Venters BJ, Cook RS, Pietenpol JA. p73 Is Required for
Ovarian Follicle Development and Regulates a Gene Network Involved in
Cell-to-Cell Adhesion. iScience. 2018 Oct 26;8:236-249.
- Serra N, Velte EK, Niedenberger BA, Kirsanov O, Geyer CB. The mTORC1
component RPTOR is required for maintenance of the foundational
spermatogonial stem cell pool in mice†. Biol Reprod. 2019 Feb
1;100(2):429-439.
- Silveira LF, Stewart PM, Thomas M, Clark DA, Bouloux PM, MacColl GS.
Novel homozygous splice acceptor site GnRH receptor (GnRHR) mutation:
human GnRHR ”knockout”. J Clin Endocrinol Metab. 2002
Jun;87(6):2973-7.
- Taylor CM, Kamphuis LG, Zhang W, Garg G, Berger JD,
Mousavi-Derazmahalleh M, Bayer PE, Edwards D, Singh KB, Cowling WA,
Nelson MN. INDEL variation in the regulatory region of the major
flowering time gene LanFTc1 is associated with vernalization response
and flowering time in narrow-leafed lupin (Lupinus angustifolius L.).
Plant Cell Environ. 2019 Jan;42(1):174-187.
- Wang K, Yan H, Xu H, Yang Q, Zhang S, Pan C, Chen H, Zhu H, Liu J, Qu
L, Lan X. A novel indel within goat casein alpha S1 gene is
significantly associated with litter size. Gene. 2018 Sep
10;671:161-169.
- Wu M, Zhao H, Tang X, Li Q, Yi X, Liu S, Sun X. Novel InDels of GHR,
GHRH, GHRHR and Their Association with Growth Traits in Seven Chinese
Sheep Breeds. Animals (Basel). 2020 Oct 15;10(10):1883.
- Wang K, Li M, Hakonarson H. ANNOVAR: functional annotation of genetic
variants from high-throughput sequencing data. Nucleic Acids Res. 2010
Sep;38(16):e164.
- Wang S, Liu S, Yuan T, Sun X. Genetic effects of FTO gene
insertion/deletion (InDel) on fat-tail measurements and growth traits
in Tong sheep. Anim Biotechnol. 2021 Apr;32(2):229-239.
- Wang Z, Zhang X, Jiang E, Yan H, Zhu H, Chen H, Liu J, Qu L, Pan C,
Lan X. InDels within caprine IGF2BP1 intron 2 and the 3’-untranslated
regions are associated with goat growth traits. Anim Genet. 2020
Feb;51(1):117-121.
- Wu W, Zhang W, Choi M, Zhao J, Gao P, Xue M, Singer HA, Jourd’heuil D,
Long X. Vascular smooth muscle-MAPK14 is required for neointimal
hyperplasia by suppressing VSMC differentiation and inducing
proliferation and inflammation. Redox Biol. 2019 Apr;22:101137.
- Wissing ER, Boyer JG, Kwong JQ, Sargent MA, Karch J, McNally EM, Otsu
K, Molkentin JD. P38α MAPK underlies muscular dystrophy and myofiber
death through a Bax-dependent mechanism. Hum Mol Genet. 2014 Oct
15;23(20):5452-63.
- Xu Y, Shi T, Zhou Y, Liu M, Klaus S, Lan X, Lei C, Chen H. A novel
PAX7 10-bp indel variant modulates promoter activity, gene expression
and contributes to different phenotypes of Chinese cattle. Sci Rep.
2018 Jan 29;8(1):1724.
- Yang W, Tang K, Zhang C, Xu D, Wen Q. Yang, L. Polymorphism of the
GnRHR gene and its association with litter size in Boer goats. South
African Journal of Animal Science 2011, 41, 398-402.
- Zhou Z, Huang B, Lai Z, Li S, Wu F, Qu K, Jia Y, Hou J, Liu J, Lei C,
Dang R. The Distribution Characteristics of a 19-bp Indel of the PLAG1
Gene in Chinese Cattle. Animals (Basel). 2019 Dec 4;9(12):1082.
- Zhang Q, Jin Y, Jiang F, Cheng H, Wang Y, Lan X, Song E. Relationship
between an indel mutation within the SIRT4 gene and growth traits in
Chinese cattle. Anim Biotechnol. 2019 Oct;30(4):352-357.
- Zeng L, Fan X, Wang X, Deng H, Zhang K, Zhang X, He S, Li N, Han Q,
Liu Z. Bioinformatics Analysis based on Multiple Databases Identifies
Hub Genes Associated with Hepatocellular Carcinoma. Curr Genomics.
2019 Aug;20(5):349-361.
- Zhang W, Yang M, Wang Y, Wu X, Zhang X, Ding Y, Yin Z. Genomic
analysis reveals selection signatures of the Wannan Black pig during
domestication and breeding. Asian-Australas J Anim Sci. 2020
May;33(5):712-721.
- Zhang Y, Wang K, Liu J, Zhu H, Qu L, Chen H, Lan X, Pan C, Song X. An
11-bp Indel Polymorphism within the CSN1S1 Gene Is Associated with
Milk Performance and Body Measurement Traits in Chinese Goats. Animals
(Basel). 2019 Dec 11;9(12):1114.
- Zhao H, He S, Wang S, Zhu Y, Xu H, Luo R, Lan X, Cai Y, Sun X. Two New
Insertion/Deletion Variants of the PITX2 Gene and their Effects on
Growth Traits in Sheep. Anim Biotechnol. 2018;29(4):276-282.
- Zhang YL, Zhong X, Gjoka Z, Li Y, Stochaj W, Stahl M, Kriz R, Tobin
JF, Erbe D, Suri V. H6PDH interacts directly with 11beta-HSD1:
implications for determining the directionality of glucocorticoid
catalysis. Arch Biochem Biophys. 2009 Mar 1;483(1):45-54.